Antibody Escape

Here's what a page with antibody escape data might look like.

Individual Antibody Selections

You can include links to the antibody escape data created automatically by the dms-vep-pipeline.

• LibA-220210-REGN10933-1
• LibA-220210-REGN10933-2
• LibB-220302-REGN10933-1
• LibA-220302-S2M11-1
• LibA-220302-S2M11-2

You do this using normal markdown syntax with one exception – you include {target="_self"} after the link:

- [LibA-220210-REGN10933-1](notebooks/fit_escape_antibody_escape_LibA-220210-REGN10933-1.html){target="_self"}

This approach will work for any file that's ordinarily present in the docs/ directory created by the pipeline. For example, .html files that contain Altair plots.

• REGN10933 Escape
• S2M11 Escape

If you prefer, you can include Altair plots directly on the page.

Effects of mutations on antibody neutralization by REGN10933

You do this using a custom html-like syntax.

<Figure caption="Effects of mutations on antibody neutralization by REGN10933">
    <Altair :showShadow="true" :spec-url="'htmls/REGN10933_mut_effect.html'"></Altair>
</Figure>

The code above creates the Altair plot using the <Altair></Altair> tag and adds a figure caption with the surrounding <Figure></Figure> tag.